Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016075.1 Corchorus capsularis cultivar CVL-1 contig16096, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16864

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9735--9970
63
3.7
62
75
8
204
44
22
9
23
1.82
13611--13873
21
11.9
22
75
14
195
22
20
5
52
1.66
13669--13739
30
2.4
31
83
9
94
19
18
2
59
1.50
13653--13755
52
2.0
51
83
5
127
21
17
3
57
1.56
13699--13902
22
9.6
21
78
11
193
20
20
5
52
1.67
13705--13902
42
4.7
42
80
7
206
20
20
6
53
1.67
13849--13953
49
2.1
51
84
7
135
20
19
3
56
1.57
13934--14026
35
2.7
35
93
3
152
17
24
4
53
1.61
13948--14105
86
1.8
86
86
8
232
18
21
3
56
1.57
14042--14075
14
2.4
14
90
0
50
23
17
5
52
1.66
14063--14103
21
1.9
22
85
5
57
17
19
4
58
1.56
14034--14105
35
2.1
35
83
0
90
19
19
4
56
1.57
14186--14341
71
2.2
71
78
8
158
25
16
7
50
1.71
14289--14474
55
3.4
55
93
0
300
24
16
8
50
1.73
15361--15529
50
3.4
50
81
3
196
36
14
4
43
1.67

Tables:   1

The End!