Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016076.1 Corchorus capsularis cultivar CVL-1 contig16097, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3201
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:2356 original size:21 final size:21

Alignment explanation


    Indices: 2330--2372  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2320 GGATGACATC

                                 
       2330 TAATCCAACTTGGAGTCTAAG
          1 TAATCCAACTTGGAGTCTAAG

                                 
       2351 TAATCCAACTTGGAGTCTAAG
          1 TAATCCAACTTGGAGTCTAAG

             
       2372 T
          1 T

       2373 CAGCCCTAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30


Consensus pattern (21 bp):   
TAATCCAACTTGGAGTCTAAG
Done.