Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016077.1 Corchorus capsularis cultivar CVL-1 contig16098, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30541

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1268--1332
33
2.0
33
93
3
114
46
24
10
18
1.81
4299--4369
27
2.6
27
90
0
106
42
26
14
16
1.87
4832--4856
12
2.1
12
100
0
50
56
8
8
28
1.57
4767--5176
64
6.0
76
93
4
421
44
13
17
23
1.85
4844--5462
64
9.6
64
93
1
1051
43
14
17
24
1.86
4844--5722
128
7.0
128
87
7
1326
43
13
18
24
1.86
4969--5697
64
11.8
57
89
5
602
44
13
17
24
1.85
4733--5722
192
5.2
192
87
8
1431
43
13
18
24
1.86
5432--5519
27
3.4
27
66
15
76
44
12
17
26
1.84
5400--5564
51
3.2
51
95
1
294
44
12
16
25
1.83
5474--5554
25
3.2
25
67
16
76
53
11
14
20
1.72
5448--5529
26
3.2
26
65
16
71
45
13
18
23
1.84
5504--5722
64
3.4
64
93
1
366
42
13
19
25
1.87
5512--5782
129
2.2
125
84
6
298
42
13
19
25
1.87
5772--5893
63
1.9
63
86
0
172
46
17
18
18
1.84
6916--6949
12
2.8
12
86
0
50
0
5
8
85
0.75
15951--16105
69
2.2
70
88
1
222
25
23
18
32
1.97
19599--19629
6
5.3
6
96
3
55
51
12
0
35
1.40
22101--22154
27
2.0
28
85
3
74
22
18
18
40
1.91
22350--22456
29
3.6
30
82
6
119
35
14
30
18
1.92
24383--24425
15
2.9
15
96
0
77
6
27
23
41
1.80
25519--25567
17
2.7
18
84
12
57
20
10
6
63
1.47

Tables:   1

The End!