Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016078.1 Corchorus capsularis cultivar CVL-1 contig16099, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14106
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:4577 original size:58 final size:58

Alignment explanation


    Indices: 4507--4624  Score: 236
    Period size: 58  Copynumber: 2.0  Consensus size: 58

       4497 AAGAAATTTC

                                                                      
       4507 ACATTTCGAGATTCCATTTCTCTCATACCCCCATCTGGGTGTTCACCATACATGACAT
          1 ACATTTCGAGATTCCATTTCTCTCATACCCCCATCTGGGTGTTCACCATACATGACAT

                                                                      
       4565 ACATTTCGAGATTCCATTTCTCTCATACCCCCATCTGGGTGTTCACCATACATGACAT
          1 ACATTTCGAGATTCCATTTCTCTCATACCCCCATCTGGGTGTTCACCATACATGACAT

              
       4623 AC
          1 AC

       4625 CCCTTTGAAT


Statistics
Matches: 60,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  58   60  1.00

ACGTcount: A:0.25, C:0.31, G:0.12, T:0.32


Consensus pattern (58 bp):   
ACATTTCGAGATTCCATTTCTCTCATACCCCCATCTGGGTGTTCACCATACATGACAT
Done.