Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016082.1 Corchorus capsularis cultivar CVL-1 contig16103, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6105
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31


Found at i:3623 original size:33 final size:33

Alignment explanation


    Indices: 3586--3649  Score: 83
    Period size: 33  Copynumber: 1.9  Consensus size: 33

       3576 TGGCCGGTTG

                       *    *    *           
       3586 TGGCCGGACATGTCCATGTCGTGTGGCTGGTGT
          1 TGGCCGGACATCTCCAAGTCGCGTGGCTGGTGT

                   * *                     
       3619 TGGCCGGGCTTCTCCAAGTCGCGTGGCTGGT
          1 TGGCCGGACATCTCCAAGTCGCGTGGCTGGT

       3650 CACTAGCGCT


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  33   26  1.00

ACGTcount: A:0.08, C:0.25, G:0.39, T:0.28


Consensus pattern (33 bp):   
TGGCCGGACATCTCCAAGTCGCGTGGCTGGTGT
Done.