Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016083.1 Corchorus capsularis cultivar CVL-1 contig16104, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4446
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31


Found at i:1399 original size:32 final size:32

Alignment explanation


    Indices: 1363--1440  Score: 129
    Period size: 32  Copynumber: 2.4  Consensus size: 32

       1353 GCTTGGTGAC

                                            
       1363 TGCCGAGCAATGGCATGAAGATGGCGCGGTAT
          1 TGCCGAGCAATGGCATGAAGATGGCGCGGTAT

                 *                  *       
       1395 TGCCGTGCAATGGCATGAAGATGGTGCGGTAT
          1 TGCCGAGCAATGGCATGAAGATGGCGCGGTAT

                    *     
       1427 TGCCGAGCCATGGC
          1 TGCCGAGCAATGGC

       1441 CGGCCATGCT


Statistics
Matches: 42,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  32   42  1.00

ACGTcount: A:0.22, C:0.21, G:0.37, T:0.21


Consensus pattern (32 bp):   
TGCCGAGCAATGGCATGAAGATGGCGCGGTAT
Done.