Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016085.1 Corchorus capsularis cultivar CVL-1 contig16106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2501
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:597 original size:43 final size:44

Alignment explanation


    Indices: 549--634  Score: 165
    Period size: 44  Copynumber: 2.0  Consensus size: 44

        539 AAATTTTCAA

                                                        
        549 AAATTGGGGAAT-AAAGATCAATCCATCAACAATCAAATTGTAG
          1 AAATTGGGGAATAAAAGATCAATCCATCAACAATCAAATTGTAG

                                                       
        592 AAATTGGGGAATAAAAGATCAATCCATCAACAATCAAATTGTA
          1 AAATTGGGGAATAAAAGATCAATCCATCAACAATCAAATTGTA

        635 ATCCTAGGTT


Statistics
Matches: 42,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  43   12  0.29
  44   30  0.71

ACGTcount: A:0.48, C:0.14, G:0.15, T:0.23


Consensus pattern (44 bp):   
AAATTGGGGAATAAAAGATCAATCCATCAACAATCAAATTGTAG
Done.