Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016087.1 Corchorus capsularis cultivar CVL-1 contig16108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51533

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3187--3222
19
1.9
18
88
5
54
33
22
2
41
1.68
5296--5333
14
2.7
14
80
12
51
78
0
21
0
0.74
5288--5329
7
6.0
7
81
10
50
78
0
21
0
0.75
5443--5479
14
2.6
14
95
4
65
78
8
5
8
1.09
6663--6689
12
2.2
12
100
0
54
25
14
14
44
1.84
8423--8469
22
2.1
22
100
0
94
40
12
0
46
1.42
10923--11110
83
2.3
83
87
3
274
20
24
21
32
1.97
14787--14910
33
3.7
33
77
8
126
24
40
26
8
1.84
18039--18225
48
3.9
47
81
4
212
35
12
28
23
1.91
18041--18225
96
1.9
98
84
4
250
35
12
28
23
1.91
22201--22254
26
2.4
21
71
28
56
44
7
18
29
1.77
25579--25641
21
3.0
21
70
23
60
7
52
28
11
1.65
26512--26558
24
2.0
24
83
8
60
21
6
17
55
1.64
29005--29037
13
2.5
13
95
0
57
21
12
9
57
1.62
29034--29060
6
4.5
6
100
0
54
29
0
14
55
1.40
36144--36180
18
2.1
18
89
0
56
37
10
27
24
1.88
39348--39391
21
2.2
20
83
4
52
20
6
11
61
1.52
48701--48739
20
2.0
20
89
0
60
25
23
20
30
1.98

Tables:   1

The End!