Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016088.1 Corchorus capsularis cultivar CVL-1 contig16109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36079

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3400--3568
22
7.7
22
71
6
92
38
17
5
38
1.74
3493--3576
44
1.9
44
87
0
123
36
19
7
36
1.79
3537--3584
22
2.2
22
81
7
53
39
14
8
37
1.76
3579--3694
22
5.4
22
81
6
121
35
12
11
40
1.79
5843--5937
6
15.0
6
69
25
54
3
18
45
32
1.66
5845--5884
17
2.3
17
91
4
62
0
25
52
22
1.47
5872--5933
16
3.9
15
83
6
70
4
16
40
38
1.69
5872--5932
32
1.9
32
86
0
86
4
16
40
37
1.70
9217--9599
156
2.5
156
75
9
377
31
15
19
33
1.93
12666--12706
16
2.6
16
84
0
55
4
17
39
39
1.71
13904--14017
59
1.9
59
96
0
210
27
4
17
50
1.65
18667--18702
1
36.0
1
100
0
72
0
0
0
100
0.00
19351--19419
1
69.0
1
76
0
66
88
11
0
0
0.52
19349--19423
7
11.7
7
90
8
92
86
13
0
0
0.57
26481--26553
33
2.2
33
90
2
112
23
27
1
47
1.59
26629--26657
13
2.2
13
100
0
58
24
20
20
34
1.97
28185--28221
19
1.9
19
88
0
56
27
5
8
59
1.48
28913--28937
10
2.5
10
100
0
50
48
20
8
24
1.76
29880--29905
6
4.3
6
100
0
52
30
0
15
53
1.42
30185--30255
32
2.2
32
87
5
99
30
11
7
50
1.65
35993--36017
10
2.5
10
100
0
50
48
20
8
24
1.76

Tables:   1

The End!