genome.fa.s16089.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016089.1 Corchorus capsularis cultivar CVL-1 contig16110, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91044

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
799--912	38	3.0	38	94	0	192	32	12	25	29	1.92
1875--1955	33	2.5	33	88	5	114	6	25	43	24	1.77
1875--1976	30	3.3	30	81	10	116	7	26	39	26	1.83
8214--8286	30	2.3	33	86	6	98	6	26	41	26	1.80
8573--8730	83	1.9	82	94	3	282	27	14	18	39	1.89
12369--12434	28	2.4	28	94	0	114	25	22	18	33	1.97
14407--14477	32	2.2	32	85	2	99	16	14	32	36	1.89
20468--20581	30	3.6	30	85	11	149	23	40	27	8	1.84
20468--20564	33	3.0	33	89	7	146	23	39	27	9	1.85
26691--26727	19	2.0	18	89	5	56	29	21	8	40	1.82
27031--27064	13	2.6	13	86	13	52	47	0	47	5	1.26
33586--33755	94	1.8	92	82	9	220	21	38	15	24	1.92
37824--37889	34	2.0	33	93	3	114	25	27	28	18	1.98
41032--41060	5	6.0	5	96	4	51	82	0	0	17	0.66
42565--42651	33	2.6	34	85	7	108	27	9	21	41	1.84
42644--42722	33	2.4	33	91	0	122	29	8	15	46	1.75
48984--49077	33	2.9	31	79	9	91	9	26	39	24	1.86
55586--55629	12	3.7	12	93	0	79	6	22	43	27	1.78
78959--78993	18	1.9	18	100	0	70	57	11	0	31	1.34
80079--80154	33	2.3	33	88	2	109	14	27	39	18	1.90
81941--82046	33	3.3	29	72	21	88	41	17	10	30	1.83
81966--82045	33	2.4	33	82	0	106	42	18	10	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84132--84223	33	2.8	33	85	3	105	7	25	43	23	1.80
84171--84275	33	3.2	33	83	2	113	9	26	40	23	1.85
87463--87493	2	15.5	2	93	0	53	54	0	0	45	0.99

Tables:   1

The End!