Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016091.1 Corchorus capsularis cultivar CVL-1 contig16112, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28275

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2366--2403
11
3.5
11
89
10
51
39
0
2
57
1.12
3866--4317
228
2.0
227
98
1
870
40
9
14
35
1.80
5026--5099
24
2.9
25
86
6
87
70
2
5
21
1.20
5038--5102
12
5.3
12
76
10
69
73
1
4
20
1.08
5038--5140
4
26.0
4
72
11
52
69
1
4
23
1.17
5189--5228
17
2.4
17
95
0
71
55
2
10
32
1.47
5201--5276
27
3.0
26
78
17
79
59
3
10
26
1.48
5269--5330
26
2.5
26
79
10
67
62
1
14
20
1.39
6787--7217
54
8.1
54
84
3
577
32
28
18
20
1.96
6787--7217
107
4.0
108
87
2
595
32
28
18
20
1.96
7205--7426
35
6.4
35
84
7
283
32
18
18
29
1.96
7184--7426
70
3.5
69
89
3
353
32
20
18
28
1.96
8353--8385
17
1.9
17
93
0
57
0
3
15
81
0.80
11047--11073
2
13.5
2
100
0
54
51
0
0
48
1.00
14537--14579
10
4.3
10
85
14
54
79
0
2
18
0.85
14537--14577
16
2.6
16
92
7
66
80
0
2
17
0.82
14536--14631
24
4.3
23
75
9
81
68
3
3
25
1.18
14691--14730
17
2.4
17
95
0
71
55
2
10
32
1.47
14703--14755
27
2.0
27
88
7
81
58
3
9
28
1.47
14683--14779
44
2.2
45
78
12
103
58
2
11
27
1.44
16932--16960
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!