genome.fa.s16092.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016092.1 Corchorus capsularis cultivar CVL-1 contig16113, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73748

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224--287	35	1.9	33	90	9	103	45	14	23	17	1.84
1014--1510	22	23.4	22	70	17	203	21	19	3	54	1.59
1028--1083	7	7.9	7	78	4	58	19	21	3	55	1.58
1014--1142	43	3.0	43	90	2	197	22	17	5	55	1.62
1230--1406	7	24.7	7	65	11	63	23	19	1	55	1.51
1220--1276	14	4.1	14	82	8	71	17	21	1	59	1.46
1264--1507	64	3.9	64	76	11	202	22	19	3	54	1.58
1434--1725	35	8.1	34	73	17	184	20	22	3	54	1.58
1563--1725	69	2.3	68	83	9	186	20	21	3	54	1.58
1799--1929	53	2.5	53	92	0	217	17	19	6	55	1.64
1799--1926	27	4.9	25	81	12	150	16	20	7	56	1.63
6479--6512	17	2.0	17	100	0	68	52	5	0	41	1.25
6674--7112	165	2.6	163	85	5	578	39	15	15	29	1.87
11801--11842	21	2.0	20	82	13	50	26	9	11	52	1.68
16751--16789	2	20.0	2	89	5	62	51	0	0	48	1.00
17660--17762	53	1.9	53	94	0	179	37	14	14	33	1.87
21654--22548	55	16.4	54	86	5	1177	50	5	16	27	1.67
27963--27995	14	2.4	14	94	0	57	45	27	0	27	1.54
28361--28400	13	2.8	14	85	14	55	25	7	37	30	1.83
30314--30338	3	8.3	3	100	0	50	32	0	32	36	1.58
32065--32107	9	4.9	9	83	16	63	81	0	18	0	0.69
32466--32491	3	8.7	3	100	0	52	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46453--46601	30	4.9	30	93	0	208	32	25	22	19	1.97
46577--46619	18	2.4	18	84	0	50	39	16	20	23	1.92
47021--47058	2	19.0	2	88	0	58	44	0	0	55	0.99
49250--49290	13	3.2	13	77	19	50	14	14	9	60	1.57
52981--53812	433	1.9	430	85	4	1134	40	13	15	30	1.85
57632--57687	25	2.3	25	96	3	105	25	21	17	35	1.95
58876--58938	30	2.1	30	90	0	99	41	31	12	14	1.83
63054--63177	33	3.7	32	80	12	135	23	41	27	8	1.82
69330--69359	14	2.1	14	100	0	60	50	13	0	36	1.42
72219--72402	37	5.2	37	80	10	224	46	9	18	25	1.80
72301--72363	31	2.0	31	90	0	99	39	11	20	28	1.87
72219--72398	68	2.6	67	82	11	193	45	10	18	26	1.81
72373--72562	71	2.7	71	92	0	317	43	10	22	24	1.83
72588--72916	41	8.1	40	88	2	408	38	11	22	26	1.88
72910--73209	37	8.2	36	86	2	366	46	8	19	25	1.79
72914--73206	73	4.0	73	85	4	360	46	8	19	25	1.79
73229--73474	41	6.3	40	76	12	244	44	10	20	24	1.82
73223--73429	76	2.7	76	94	1	362	44	10	19	25	1.82
73284--73522	117	2.1	115	89	6	380	45	9	18	26	1.79
73585--73743	37	4.3	37	91	3	248	42	8	27	20	1.82

Tables:   1

The End!