Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016093.1 Corchorus capsularis cultivar CVL-1 contig16114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41801

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
775--823
24
2.0
25
92
4
82
75
2
18
4
1.06
781--829
15
3.3
15
77
5
55
81
2
14
2
0.87
853--888
18
2.0
18
94
0
63
52
5
13
27
1.63
2391--2415
2
12.5
2
100
0
50
48
0
0
52
1.00
7015--7042
2
14.0
2
100
0
56
50
0
0
50
1.00
7042--7080
2
19.5
2
100
0
78
0
0
48
51
1.00
8010--8042
15
2.1
16
88
5
50
78
0
9
12
0.95
8086--8110
7
3.6
7
100
0
50
64
12
0
24
1.27
15257--15294
15
2.6
14
84
15
51
26
18
15
39
1.91
17546--17614
30
2.3
30
84
0
93
37
5
17
39
1.74
18176--18352
89
2.0
89
82
6
216
14
27
20
38
1.91
18308--18757
49
9.2
49
84
7
515
19
30
17
32
1.95
18317--18756
147
3.0
147
87
4
577
19
31
17
32
1.95
19079--19385
152
2.0
152
100
0
614
24
20
28
25
1.99
31301--31460
78
2.1
78
85
4
216
34
15
0
50
1.49
36784--36831
24
2.0
24
95
0
87
31
4
14
50
1.62
40351--40392
2
21.0
2
100
0
84
50
50
0
0
1.00
41556--41582
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!