Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016098.1 Corchorus capsularis cultivar CVL-1 contig16119, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32758

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6444--6468
12
2.1
12
100
0
50
0
0
16
84
0.63
6527--6580
22
2.4
23
78
3
65
37
3
5
53
1.42
14810--14913
16
6.5
16
78
4
120
33
38
19
8
1.82
14790--14909
48
2.5
48
83
5
127
31
40
20
7
1.81
15027--15073
21
2.2
21
92
0
76
29
8
6
55
1.55
15542--15653
9
13.9
9
71
20
88
33
36
19
9
1.85
15520--15652
16
8.4
16
78
7
130
32
36
21
9
1.86
15520--15654
32
4.2
32
83
4
159
33
36
20
9
1.85
20874--21017
22
6.5
22
73
19
88
35
10
16
37
1.83
20869--21490
44
14.3
44
70
15
244
36
9
16
38
1.81
21066--21143
21
3.6
22
87
5
106
41
3
11
43
1.59
21131--21323
22
8.8
22
71
20
113
36
6
15
41
1.73
21109--21388
65
4.3
64
76
9
192
37
7
15
39
1.76
21291--21366
22
3.5
21
78
7
64
39
10
15
34
1.82
21181--21398
87
2.5
87
75
12
198
37
8
16
38
1.79
21435--21492
22
2.6
22
75
5
64
39
6
18
34
1.78
23615--23658
22
2.0
22
86
0
61
22
22
25
29
1.99
25674--25781
33
3.3
33
88
0
117
41
18
12
27
1.86
30147--30248
50
2.0
50
100
0
204
31
19
22
26
1.98

Tables:   1

The End!