Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016099.1 Corchorus capsularis cultivar CVL-1 contig16120, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10877
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:1798 original size:27 final size:27

Alignment explanation


    Indices: 1730--1805  Score: 98
    Period size: 27  Copynumber: 2.8  Consensus size: 27

       1720 ACATCCTGGT

                                       
       1730 CATCCAGGGGCATTTTGGTCATTTACA
          1 CATCCAGGGGCATTTTGGTCATTTACA

                     **                
       1757 CATCCAGGGATATTTTGGTCATTTACA
          1 CATCCAGGGGCATTTTGGTCATTTACA

            *  **            *    
       1784 TATTTAGGGGCATTTTGATCAT
          1 CATCCAGGGGCATTTTGGTCAT

       1806 CTCAAGTCCA


Statistics
Matches: 41,  Mismatches: 8, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  27   41  1.00

ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38


Consensus pattern (27 bp):   
CATCCAGGGGCATTTTGGTCATTTACA

Found at i:10080 original size:2 final size:2

Alignment explanation


    Indices: 10073--10104  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

      10063 AAAGATAAAG

                                                    *      
      10073 AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

      10105 GTGTGTGTGT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47


Consensus pattern (2 bp):   
AT

Done.