Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016100.1 Corchorus capsularis cultivar CVL-1 contig16121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40417

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8946--8988
21
2.0
21
81
0
50
32
6
13
46
1.71
17329--17387
22
2.7
22
71
10
57
44
13
6
35
1.71
17420--17473
10
5.7
10
79
16
53
53
16
1
27
1.53
17431--17466
17
2.1
18
89
5
56
55
22
0
22
1.44
20096--20126
15
2.1
15
100
0
62
32
12
25
29
1.93
20187--20219
15
2.1
16
88
5
50
54
0
0
45
0.99
23932--24051
40
3.0
40
95
0
213
20
11
29
38
1.88
31331--31445
33
3.5
33
91
1
178
43
17
9
29
1.80
31331--31473
66
2.2
65
81
5
155
44
18
8
28
1.79
31464--31568
33
3.2
33
78
2
113
45
20
9
24
1.80
33082--33106
9
2.8
9
100
0
50
8
0
0
92
0.40

Tables:   1

The End!