Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016103.1 Corchorus capsularis cultivar CVL-1 contig16124, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45143

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7390--7425
2
18.0
2
94
0
63
50
2
0
47
1.15
7910--7989
32
2.5
32
85
4
99
32
22
13
31
1.93
8511--8561
21
2.4
21
74
6
50
21
3
7
66
1.34
10066--10199
27
5.0
27
82
1
162
26
33
20
19
1.97
23095--23160
33
2.0
33
87
0
96
25
13
10
50
1.74
23289--23349
31
2.0
29
81
12
70
45
6
4
42
1.51
23844--23912
31
2.2
33
89
7
115
55
17
11
15
1.70
24326--24356
16
1.9
16
93
0
53
48
6
12
32
1.67
25303--25435
64
2.1
63
85
4
185
23
18
22
35
1.96
25328--25431
34
3.3
30
71
11
91
22
20
25
32
1.97
25532--25677
32
4.6
32
78
8
163
19
19
20
40
1.92
25566--25691
64
2.0
64
82
6
157
21
21
20
36
1.95
27350--27453
43
2.4
43
92
6
167
37
21
7
33
1.82
31771--31872
40
2.5
40
85
6
143
48
6
17
27
1.73
31831--31977
31
4.5
31
73
19
129
48
8
16
25
1.75
31793--32014
70
3.1
70
82
7
245
46
9
18
26
1.78
31869--32084
111
1.9
111
87
3
319
45
9
18
26
1.80
31943--32053
41
2.8
41
79
2
127
44
9
19
26
1.82
32064--32336
37
7.2
37
83
6
287
45
10
17
26
1.80
32064--32348
114
2.5
113
84
7
362
45
10
17
25
1.80
32064--32348
151
1.9
151
86
2
403
45
10
17
25
1.80
32344--32675
41
8.1
41
87
6
372
46
10
18
24
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32342--32671
82
4.0
83
83
6
413
46
10
19
23
1.81
32352--32658
165
1.9
165
86
4
449
46
11
17
24
1.81
32681--32864
32
5.5
32
80
8
172
45
8
17
28
1.77
43885--43933
21
2.3
22
83
13
59
42
12
12
32
1.79

Tables:   1

The End!