Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016105.1 Corchorus capsularis cultivar CVL-1 contig16126, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25173

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--27
3
9.0
3
100
0
54
33
0
0
66
0.92
1897--2003
39
2.7
38
81
5
124
25
7
26
41
1.81
4538--4603
16
4.3
16
71
11
57
15
21
30
33
1.94
5214--5562
72
4.9
72
80
4
409
31
18
28
21
1.97
5214--5562
144
2.4
145
87
2
499
31
18
28
21
1.97
7253--7288
18
2.1
17
94
5
63
11
16
8
63
1.49
8029--8076
20
2.3
20
78
3
51
18
8
8
64
1.46
9920--10027
52
2.1
52
94
0
189
25
47
19
8
1.77
13361--13408
20
2.3
20
82
3
60
18
6
10
64
1.45
14461--14540
40
2.0
40
80
4
90
35
18
23
22
1.96
16732--16842
39
2.8
38
86
2
123
21
9
28
40
1.84
18286--18323
11
3.5
11
89
10
51
39
0
2
57
1.12
20375--20421
20
2.4
20
89
3
69
40
4
17
38
1.69
21176--21245
29
2.4
28
78
7
68
32
22
15
28
1.95
22361--22392
2
16.0
2
100
0
64
50
0
0
50
1.00
24423--24458
18
2.0
18
94
0
63
55
19
0
25
1.43

Tables:   1

The End!