Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016106.1 Corchorus capsularis cultivar CVL-1 contig16127, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8104
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27


Found at i:3088 original size:15 final size:15

Alignment explanation


    Indices: 3068--3097  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       3058 CCAAAGAAGA

                           
       3068 AAAGCTTGAATTTTT
          1 AAAGCTTGAATTTTT

                   *       
       3083 AAAGCTTTAATTTTT
          1 AAAGCTTGAATTTTT

       3098 GGCCTAAATT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50


Consensus pattern (15 bp):   
AAAGCTTGAATTTTT
Done.