Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016107.1 Corchorus capsularis cultivar CVL-1 contig16128, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41111

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2127--2158
2
16.5
2
93
6
57
50
0
0
50
1.00
4391--4426
19
1.9
18
94
5
63
52
5
0
41
1.24
13714--13754
21
2.0
21
85
9
57
29
9
21
39
1.86
28336--28458
56
2.1
58
84
12
157
24
19
13
43
1.86
28431--28482
24
2.2
24
89
0
77
26
21
7
44
1.79
28499--28735
35
6.7
35
76
3
231
17
17
25
39
1.91
28492--28735
71
3.4
71
82
6
296
17
17
25
39
1.91
28548--28753
108
1.9
108
87
2
306
17
16
27
38
1.91
28548--28765
107
2.0
108
86
2
305
16
16
27
38
1.91
28580--28801
108
2.1
107
82
5
261
16
17
25
40
1.90
31791--31826
18
2.1
17
94
5
63
63
8
16
11
1.49
34189--34231
16
2.8
16
82
10
54
55
18
9
16
1.67
36865--36911
21
2.2
21
84
3
58
38
12
8
40
1.74
36876--36915
21
1.9
21
94
0
71
37
10
12
40
1.77
37151--37198
20
2.3
21
89
3
71
66
6
8
18
1.39
37928--37963
18
2.1
17
94
5
63
63
8
16
11
1.49
40907--40937
15
2.1
15
93
0
53
16
19
32
32
1.94
40917--40962
24
2.0
23
91
8
76
17
21
34
26
1.95

Tables:   1

The End!