Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016108.1 Corchorus capsularis cultivar CVL-1 contig16129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22511

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1170--1195
10
2.6
10
100
0
52
50
19
7
23
1.73
3399--3449
24
2.1
24
100
0
102
37
11
19
31
1.88
5774--5806
16
2.1
16
94
0
57
84
0
15
0
0.61
5902--5934
14
2.4
14
90
5
50
39
12
12
36
1.80
6581--6629
18
2.7
17
81
12
53
79
4
10
6
1.03
6581--6629
19
2.6
19
81
12
57
79
4
10
6
1.03
6752--6924
87
2.0
87
89
2
267
36
11
24
27
1.90
7749--7798
24
2.0
27
84
11
70
20
16
18
46
1.85
7759--7804
24
1.9
24
82
8
58
19
15
17
47
1.82
7689--8091
37
10.8
38
78
7
371
24
15
15
44
1.85
7661--8091
74
5.8
74
84
3
515
24
16
15
44
1.85
8314--8366
27
2.0
27
81
7
63
37
28
7
26
1.83
8757--8792
16
2.2
17
90
5
56
41
13
44
0
1.44
10314--10344
16
2.0
16
93
6
55
32
12
9
45
1.75
10419--10456
16
2.4
16
86
4
51
5
13
42
39
1.66
10446--10488
17
2.5
17
78
14
52
0
18
44
37
1.50
10922--10993
31
2.3
33
74
13
80
58
9
5
26
1.52
11167--11211
16
2.9
15
87
9
63
2
15
42
40
1.59
11183--11225
22
2.0
22
85
0
59
4
16
46
32
1.67
11894--11938
22
2.0
22
82
0
54
28
13
11
46
1.77
15918--15949
16
2.0
16
93
0
55
18
15
31
34
1.93
18034--18078
13
3.5
13
87
3
65
20
13
11
55
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18075--18101
6
4.5
6
100
0
54
29
0
14
55
1.40

Tables:   1

The End!