Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016109.1 Corchorus capsularis cultivar CVL-1 contig16130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12012

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
355--385
15
2.1
15
93
0
53
16
19
32
32
1.94
365--410
24
2.0
23
91
8
76
17
21
34
26
1.95
2854--2991
74
1.9
74
93
1
242
25
18
21
34
1.96
3113--3183
27
2.6
27
90
0
106
22
21
29
26
1.99
3346--3406
27
2.3
27
88
0
86
18
27
27
26
1.98
3481--3568
19
4.8
19
71
13
85
19
26
17
37
1.93
3469--3541
35
2.1
36
84
2
94
19
23
19
38
1.93
3549--3718
50
3.4
50
86
0
241
24
24
15
35
1.95
3555--3893
187
1.8
184
85
3
482
23
24
16
35
1.94
3711--4387
49
13.6
49
83
5
715
21
24
19
34
1.96
3913--3993
27
3.2
27
60
22
66
18
28
20
32
1.97
3711--4387
196
3.4
196
89
3
894
21
24
19
34
1.96
5830--5860
15
2.1
15
93
0
53
16
19
32
32
1.94
5845--5909
24
2.7
24
100
0
130
16
20
36
26
1.93
9471--9529
31
1.9
31
82
3
75
32
20
15
32
1.93
9481--9567
29
2.9
30
76
11
97
31
19
13
35
1.91
9835--9879
23
2.0
23
90
0
72
26
31
15
26
1.96
10726--10790
26
2.5
26
97
0
121
32
15
18
33
1.92

Tables:   1

The End!