Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016110.1 Corchorus capsularis cultivar CVL-1 contig16131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22386

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3195--3275
40
2.0
40
97
0
153
46
20
7
24
1.76
3312--3341
15
2.0
15
100
0
60
46
20
6
26
1.75
3649--3685
9
3.8
10
83
16
51
62
2
35
0
1.10
3685--3737
23
2.3
24
83
9
74
26
7
28
37
1.83
6032--6070
14
2.8
14
84
0
51
74
12
7
5
1.20
8752--8808
24
2.4
23
85
5
69
36
0
1
61
1.07
10644--10678
2
17.5
2
93
0
61
51
2
0
45
1.16
10939--10991
3
17.7
3
84
7
72
30
0
1
67
1.01
11620--11665
23
2.0
23
100
0
92
30
4
26
39
1.75
13977--14040
21
3.2
21
69
13
62
15
7
34
42
1.76
17167--17216
6
9.0
6
78
12
54
0
2
16
82
0.77
17167--17210
16
2.6
17
85
7
63
0
2
15
81
0.78
17167--17216
11
4.5
11
81
18
68
0
2
16
82
0.77
17167--17215
16
3.0
16
80
19
57
0
2
16
81
0.78
18367--18438
31
2.3
31
73
4
74
26
6
9
56
1.56
18965--19016
16
3.3
16
83
5
70
46
34
9
9
1.69
18969--19016
15
3.1
15
84
3
60
47
33
8
10
1.68
18989--19041
22
2.5
22
87
3
81
41
41
9
7
1.66
21223--21269
25
1.9
25
91
4
78
42
17
10
29
1.82
21981--22028
22
2.2
22
92
0
78
45
4
22
27
1.70

Tables:   1

The End!