Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016121.1 Corchorus capsularis cultivar CVL-1 contig16142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21853
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32


Found at i:6375 original size:21 final size:21

Alignment explanation


    Indices: 6337--6376  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       6327 GGTGCCCACA

                 *       *       
       6337 TGGTTTGTCTGAAGACCCATG
          1 TGGTTCGTCTGAACACCCATG

                        *      
       6358 TGGTTCGTCTGATCACCCA
          1 TGGTTCGTCTGAACACCCA

       6377 GGTGAGTTGT


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.17, C:0.25, G:0.25, T:0.33


Consensus pattern (21 bp):   
TGGTTCGTCTGAACACCCATG

Found at i:21811 original size:2 final size:2

Alignment explanation


    Indices: 21795--21834  Score: 66
    Period size: 2  Copynumber: 21.0  Consensus size: 2

      21785 TTCGCTTGTT

                                                                          
      21795 TA TA -A TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

      21835 ACCTTCACCC


Statistics
Matches: 36,  Mismatches: 0, Indels: 4
        0.90            0.00        0.10

Matches are distributed among these distances:
   1    2  0.06
   2   34  0.94

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (2 bp):   
TA

Done.