Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016125.1 Corchorus capsularis cultivar CVL-1 contig16146, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63393

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--79
13
5.2
13
75
19
70
39
4
2
53
1.36
3112--3259
31
4.8
31
83
2
172
35
26
21
16
1.94
3115--3259
62
2.3
62
84
0
191
35
26
21
16
1.94
4253--4303
26
2.1
24
83
16
70
21
13
15
49
1.79
5792--5881
46
2.0
46
88
0
135
42
28
7
21
1.80
7716--7761
24
1.9
24
82
8
58
58
8
10
21
1.58
7917--7960
22
2.0
22
82
8
54
40
13
4
40
1.65
8017--8180
31
5.4
31
69
11
133
34
20
18
26
1.96
8021--8185
60
2.8
60
89
0
258
34
20
18
26
1.96
8214--8381
66
2.7
60
83
12
230
26
20
17
35
1.94
8227--8358
66
2.0
66
96
0
246
27
19
16
36
1.93
8452--8816
22
16.7
22
68
11
135
36
14
9
39
1.78
8611--8714
23
4.6
23
79
1
95
40
13
7
38
1.73
8895--8949
19
2.9
19
91
0
83
23
25
12
38
1.90
9038--9186
44
3.4
43
75
9
124
33
11
9
45
1.72
9038--9204
88
1.9
88
80
9
198
34
11
9
44
1.73
9036--9450
22
18.7
22
66
12
91
34
14
9
40
1.79
10250--10278
15
1.9
15
100
0
58
20
31
0
48
1.50
12763--12838
32
2.4
31
85
10
100
9
43
35
11
1.73
13122--13258
73
1.9
73
81
6
170
28
21
13
37
1.91
17199--17260
31
2.0
31
96
0
115
40
6
17
35
1.76
20350--20411
31
2.0
31
96
0
115
40
6
17
35
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22102--22139
19
2.0
19
100
0
76
36
21
15
26
1.93
24481--24986
35
14.6
35
84
8
594
31
16
9
41
1.82
24481--24986
205
2.4
207
84
8
640
31
16
9
41
1.82
24481--24986
240
2.1
239
85
7
675
31
16
9
41
1.82
28219--28348
26
4.8
26
74
10
118
21
20
4
53
1.64
28219--28338
55
2.2
54
78
14
133
21
20
5
52
1.65
28317--28366
18
2.8
17
80
19
66
22
22
0
56
1.43
28351--28499
65
2.3
66
85
6
198
16
24
2
57
1.52
28352--28441
37
2.4
37
81
7
110
15
23
2
58
1.48
28219--28461
27
8.9
28
70
14
109
19
21
3
54
1.59
28451--28754
163
1.8
164
93
3
531
21
18
4
55
1.61
28671--28958
22
13.5
22
74
11
206
23
19
5
51
1.67
28737--28958
85
2.6
84
81
10
220
23
21
5
49
1.70
28671--29026
22
17.1
20
74
11
136
23
21
5
50
1.68
36792--36945
84
1.8
84
85
1
220
51
2
9
35
1.49
38144--38171
2
14.0
2
100
0
56
50
0
0
50
1.00
38449--38667
112
2.0
112
94
0
386
33
12
14
39
1.84
42255--42326
29
2.4
30
84
9
85
43
16
16
23
1.88
44039--44077
18
2.3
17
91
8
62
69
0
10
20
1.17
44161--44228
29
2.3
30
80
12
77
22
22
17
38
1.93
56794--56833
21
1.9
21
85
10
55
72
5
7
15
1.24
57440--57470
15
2.1
15
93
0
53
58
0
35
6
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58260--58302
18
2.4
16
82
17
50
37
6
9
46
1.63

Tables:   1

The End!