Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016126.1 Corchorus capsularis cultivar CVL-1 contig16147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65939

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1619--1650
10
3.2
10
100
0
64
18
0
0
81
0.70
1705--1772
26
2.6
26
90
0
109
32
2
11
52
1.53
1782--1841
26
2.4
25
89
8
88
41
0
23
35
1.55
1909--1951
21
2.0
21
86
0
59
27
4
41
25
1.75
9085--9127
11
3.9
11
90
0
68
46
6
4
41
1.51
9081--9127
22
2.1
22
96
0
85
46
6
4
42
1.48
9358--9400
11
3.9
11
87
0
59
46
9
4
39
1.57
9354--9400
22
2.1
22
92
0
76
46
8
4
40
1.54
8944--9475
273
1.9
273
97
0
1010
34
18
7
39
1.79
10215--10239
11
2.3
11
100
0
50
92
0
0
8
0.40
10469--10519
15
3.5
15
81
5
52
29
5
1
62
1.29
14324--14376
26
2.1
26
85
3
72
18
20
13
47
1.82
18669--18695
14
1.9
14
100
0
54
44
33
7
14
1.73
20301--20639
35
9.6
34
80
7
329
31
18
9
40
1.83
20301--20639
143
2.4
141
82
6
407
31
18
9
40
1.83
23954--24023
35
2.0
36
94
5
126
51
20
14
14
1.76
32799--32843
16
2.9
15
87
9
56
48
4
6
40
1.49
32797--32856
16
3.8
16
73
10
52
53
5
5
36
1.45
35725--35851
35
3.6
35
73
6
130
40
24
18
16
1.91
35692--35860
71
2.4
71
94
0
293
37
26
17
18
1.93
35762--35991
105
2.2
105
91
1
370
36
28
17
17
1.93
36007--36052
24
1.9
24
81
0
56
36
6
28
28
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36061--36143
35
2.4
36
82
8
100
38
19
19
22
1.93
42719--43060
35
9.6
35
83
7
352
32
17
9
40
1.83
42719--43064
143
2.4
141
84
5
455
32
17
9
40
1.83
46122--46161
20
2.0
20
90
0
62
0
15
2
82
0.77
46122--46161
19
2.1
20
86
9
57
0
15
2
82
0.77
46383--46450
35
1.9
36
94
5
122
52
17
14
14
1.74
47757--47811
23
2.3
24
78
3
58
14
10
12
61
1.56
49848--49910
29
2.3
27
94
5
108
25
1
6
66
1.24
61790--61848
30
2.0
30
86
6
84
30
16
28
23
1.97

Tables:   1

The End!