Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016129.1 Corchorus capsularis cultivar CVL-1 contig16150, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7510

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3859--3910
9
5.7
9
79
4
50
78
1
15
3
0.98
3865--3910
17
2.5
19
82
13
60
80
2
15
2
0.91
3866--3910
18
2.4
18
88
3
63
82
2
13
2
0.86
3876--3916
11
3.7
11
87
9
57
87
0
12
0
0.53
3876--3916
20
2.1
20
86
4
57
87
0
12
0
0.53
3878--3917
15
2.6
15
88
4
53
85
0
15
0
0.61
3909--3952
24
1.9
22
95
4
70
65
0
25
9
1.21
4554--4700
50
2.9
50
91
1
231
34
14
12
38
1.84
5214--5414
70
2.9
70
93
0
341
25
27
17
28
1.98
5615--5673
28
2.1
28
84
12
77
32
25
5
37
1.78
5659--5830
22
7.5
22
71
13
82
27
22
4
45
1.72
5790--5847
8
7.2
8
75
7
55
29
24
3
43
1.70
5792--5862
24
2.9
24
87
4
97
30
25
4
39
1.75
5790--5856
16
4.1
16
75
11
55
29
23
2
43
1.69
5919--5973
28
2.0
26
86
6
74
27
20
5
47
1.72
5922--6120
22
8.9
22
72
13
138
30
21
4
44
1.71
5985--6011
14
1.9
14
100
0
54
33
22
0
44
1.53
6030--6229
14
14.8
14
64
26
58
30
20
5
43
1.74
5922--6099
36
4.8
35
74
10
108
29
20
3
45
1.69
6110--6168
22
2.7
22
86
0
82
33
20
6
38
1.79

Tables:   1

The End!