genome.fa.s16130.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016130.1 Corchorus capsularis cultivar CVL-1 contig16151, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75166

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4279--4320	22	1.9	22	90	0	66	40	26	19	14	1.89
4983--5051	31	2.2	31	97	0	129	47	5	17	28	1.70
5851--6145	109	2.7	109	91	4	448	49	1	10	37	1.48
6238--6278	13	3.4	13	87	12	61	51	0	14	34	1.43
7060--7132	32	2.3	33	88	4	105	13	9	36	39	1.78
7309--7347	20	2.0	20	85	10	53	35	5	5	53	1.45
7355--7463	16	6.8	16	74	0	92	7	10	30	52	1.62
7374--7463	32	2.8	33	81	3	112	7	10	28	53	1.62
7773--7902	16	8.3	15	73	14	102	10	20	36	33	1.87
7818--7864	9	5.7	9	76	19	57	8	21	38	31	1.83
7768--7910	63	2.3	63	80	7	157	10	20	34	33	1.87
7811--7910	32	3.2	33	81	8	127	9	22	38	31	1.85
7810--7896	31	2.8	30	86	6	120	9	20	36	33	1.85
8607--8740	54	2.5	54	96	0	241	50	1	10	38	1.46
8817--8943	16	8.1	15	69	14	51	11	21	35	31	1.89
8894--8919	7	3.7	7	100	0	52	0	26	46	26	1.53
8884--8944	30	2.0	31	81	12	72	4	21	40	32	1.74
9861--10129	131	2.1	132	94	1	470	35	15	17	31	1.92
10200--10365	75	2.2	78	90	5	259	36	11	1	51	1.46
10215--10367	78	2.0	74	91	3	225	37	11	0	50	1.44
10149--10720	256	2.2	253	84	4	729	36	10	4	48	1.57
10466--10619	78	2.0	77	85	3	211	33	14	1	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19864--19916	28	1.9	28	88	3	81	18	18	22	39	1.92
19870--19942	28	2.6	28	86	0	101	16	12	27	43	1.83
23253--23366	45	2.6	44	80	13	121	54	6	21	17	1.65
23188--23564	22	17.8	22	75	13	230	53	5	22	18	1.65
23333--23492	84	1.9	81	82	6	196	52	6	21	19	1.69
23260--23537	43	6.5	42	70	11	174	54	6	21	17	1.65
23518--23592	27	2.7	27	93	2	123	56	1	26	16	1.48
23260--23533	148	1.9	147	80	6	313	54	6	21	17	1.66
23510--23592	7	12.0	7	72	16	66	57	1	25	15	1.45
33517--33695	92	1.9	92	86	6	254	32	16	11	39	1.84
34581--34610	6	5.0	6	91	0	51	33	3	13	50	1.58
34730--35565	182	4.6	182	88	4	1172	46	9	16	26	1.79
34730--35565	367	2.3	362	89	4	1272	46	9	16	26	1.79
41635--41744	53	2.0	55	85	5	152	48	10	12	28	1.75
41928--41956	7	4.1	7	100	0	58	72	0	13	13	1.13
41783--42230	185	2.4	189	89	3	690	46	10	16	26	1.78
43684--43992	155	2.0	156	83	5	394	33	18	14	32	1.92
51711--52019	155	2.0	156	84	6	414	34	18	14	32	1.91
55340--55392	17	3.2	17	74	15	58	47	16	1	33	1.58
55349--55497	76	2.0	76	91	0	244	39	16	4	40	1.67
58185--58506	166	1.9	167	86	3	452	39	17	13	30	1.87
58843--58868	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63245--63316	36	2.0	36	100	0	144	16	22	19	41	1.90
64326--64362	19	1.9	19	88	0	56	18	10	16	54	1.71
66027--66259	70	3.2	70	84	10	306	36	12	0	49	1.47
66027--66265	78	3.2	77	89	7	350	36	12	0	49	1.47
72425--72449	1	25.0	1	100	0	50	0	0	0	100	0.00
74703--74744	15	2.8	15	78	10	50	7	19	0	73	1.05

Tables:   1

The End!