Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016131.1 Corchorus capsularis cultivar CVL-1 contig16152, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39138

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3354--3383
2
15.0
2
100
0
60
50
0
0
50
1.00
4037--4125
33
2.7
33
87
1
133
13
33
34
17
1.89
4171--4219
10
4.7
10
80
12
55
38
0
2
59
1.09
4170--4219
25
2.0
25
96
0
91
38
0
2
60
1.09
6346--6385
18
2.2
18
90
0
62
45
30
7
17
1.76
7370--7473
32
3.2
32
77
10
106
12
36
33
17
1.87
8928--9574
22
29.9
22
68
12
247
35
15
9
38
1.81
9016--9983
44
22.4
44
69
15
328
35
16
9
37
1.82
9242--9320
23
3.5
23
81
8
90
37
12
7
41
1.72
9590--9804
22
9.7
22
70
14
99
34
13
10
41
1.78
9587--9739
66
2.3
66
80
4
175
35
15
9
39
1.80
9654--9821
22
7.6
22
73
11
103
33
14
10
41
1.79
9844--9983
22
6.4
21
71
14
88
35
19
8
36
1.82
10559--10625
31
2.1
32
83
8
84
47
4
17
29
1.67
10499--10838
169
2.0
169
99
0
671
43
6
13
36
1.70
10728--10794
31
2.1
32
83
8
84
47
4
17
29
1.67
13675--13706
2
17.0
2
87
12
50
46
0
0
53
1.00
16274--16317
21
2.0
22
91
4
72
34
13
15
36
1.87
17925--17997
16
4.6
17
72
13
66
38
32
6
21
1.80
19663--19848
62
3.0
62
95
0
336
15
25
13
45
1.82
22587--22629
19
2.3
19
84
4
52
41
2
6
48
1.43
22649--22673
2
12.5
2
100
0
50
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29827--29862
18
2.0
18
100
0
72
16
11
16
55
1.68
35127--35184
25
2.3
26
79
8
66
68
1
22
6
1.22
35219--35259
13
3.3
13
80
10
50
14
7
0
78
0.96
38599--38636
19
2.0
19
90
10
60
15
15
42
26
1.87
38537--39138
119
5.1
119
94
0
1012
14
22
27
35
1.93

Tables:   1

The End!