Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016133.1 Corchorus capsularis cultivar CVL-1 contig16154, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19943

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2680--2707
6
4.7
6
100
0
56
28
53
0
17
1.44
3175--3222
12
4.2
12
81
10
55
8
31
43
16
1.78
3177--3222
16
2.7
18
90
10
78
8
32
41
17
1.80
3176--3229
12
4.9
11
80
17
51
9
31
40
18
1.82
3175--3229
28
2.0
28
96
0
101
9
30
41
18
1.81
3179--3229
16
3.5
15
74
20
54
9
31
39
19
1.84
4850--4929
23
3.6
22
77
12
74
41
1
6
51
1.35
9428--9456
13
2.1
14
93
6
51
41
10
27
20
1.85
12537--12609
28
2.6
28
91
0
101
45
27
10
16
1.81
14004--14044
10
3.8
11
81
12
50
0
21
0
78
0.76
14009--14055
23
2.0
24
88
12
71
0
17
2
80
0.80
14018--14060
15
2.7
16
86
13
54
2
13
2
81
0.89

Tables:   1

The End!