Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016136.1 Corchorus capsularis cultivar CVL-1 contig16157, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70373

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3285--3319
15
2.2
17
90
10
56
17
5
2
74
1.14
4197--4243
22
2.0
23
84
8
60
40
14
10
34
1.81
5137--5183
22
2.0
23
84
8
60
40
14
10
34
1.81
4630--5256
323
1.9
324
90
0
997
40
11
14
32
1.82
5724--5750
12
2.2
12
100
0
54
25
25
0
48
1.52
18614--18741
45
3.0
43
86
7
152
41
11
4
42
1.62
18654--18742
45
2.0
45
97
0
169
43
10
4
41
1.58
18979--19087
16
6.9
16
69
14
64
34
35
19
10
1.85
18971--19087
32
3.7
32
80
4
139
34
35
20
9
1.85
18971--19087
48
2.5
48
80
5
139
34
35
20
9
1.85
30289--30383
49
2.0
48
87
2
136
43
10
10
35
1.74
31055--31411
170
2.1
170
87
1
509
34
23
12
29
1.92
31682--31860
88
2.0
87
92
1
295
38
11
23
26
1.89
32759--32812
5
11.2
5
88
9
69
85
14
0
0
0.61
32760--32810
23
2.2
23
92
3
84
86
13
0
0
0.58
36102--36128
1
27.0
1
100
0
54
100
0
0
0
0.00
37896--37967
31
2.3
31
85
0
99
18
22
29
30
1.97
38217--38255
17
2.2
18
86
9
53
2
23
0
74
0.94
39312--39367
14
3.9
14
90
4
94
19
7
21
51
1.70
39312--39367
29
2.0
28
92
3
94
19
7
21
51
1.70
40351--40383
15
2.2
15
94
0
57
33
21
24
21
1.97
53926--53984
30
2.0
30
90
6
93
22
30
16
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54351--54464
33
3.5
33
93
0
201
44
18
11
25
1.83
54353--54497
66
2.2
66
82
2
175
42
19
11
26
1.84
54490--54594
33
3.2
33
80
2
131
45
20
9
24
1.80
55977--56005
9
3.0
10
90
10
51
20
0
0
79
0.74
55977--56005
5
6.0
5
92
8
51
20
0
0
79
0.74
56084--56117
17
2.0
17
94
0
59
23
5
14
55
1.61
64291--64329
19
2.1
19
85
0
51
33
0
12
53
1.39
66160--66306
33
4.5
32
80
7
111
10
27
40
21
1.86
66285--66326
21
2.0
21
95
0
75
11
33
30
23
1.91

Tables:   1

The End!