Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016144.1 Corchorus capsularis cultivar CVL-1 contig16165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48115

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
233--317
40
2.1
40
97
0
161
42
15
14
28
1.85
1584--1609
13
2.0
13
100
0
52
53
7
23
15
1.67
9264--9302
18
2.1
18
85
4
51
43
5
20
30
1.73
10574--10621
20
2.3
21
89
3
71
18
8
6
66
1.39
14503--14544
21
2.0
21
86
9
59
9
33
35
21
1.86
21588--21623
17
2.1
17
94
0
63
55
19
11
13
1.68
26081--26141
30
2.0
30
93
0
104
32
18
31
18
1.94
32311--32361
3
17.0
3
95
0
93
64
1
33
0
1.05
33268--33324
29
2.0
29
89
0
87
59
17
3
19
1.51
42209--42291
28
3.0
28
89
0
121
34
19
19
26
1.95
42877--42927
26
2.0
26
92
0
84
43
17
17
21
1.88
43137--43174
16
2.3
17
86
13
53
71
0
5
23
1.07
45469--45509
12
3.7
11
81
18
50
70
0
2
26
0.99

Tables:   1

The End!