Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016145.1 Corchorus capsularis cultivar CVL-1 contig16166, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43873

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--78
2
39.0
2
100
0
156
0
50
0
50
1.00
8106--8141
19
1.9
18
88
5
54
33
22
2
41
1.68
11206--11257
26
2.1
26
89
7
81
26
1
5
65
1.26
11810--11851
6
7.3
6
82
17
54
35
16
0
47
1.47
11812--11854
11
3.8
11
87
3
50
37
16
0
46
1.47
11883--11943
31
2.0
31
87
6
90
31
18
4
45
1.70
12300--12337
19
2.0
20
85
15
53
28
5
2
63
1.30
14753--14830
29
2.7
29
82
6
86
34
29
2
33
1.71
24860--24982
41
3.0
41
97
1
228
37
15
20
26
1.92
38650--38708
25
2.4
25
91
5
95
35
25
0
38
1.56
38728--38776
11
4.1
11
76
19
53
53
10
2
34
1.47
38718--38785
26
2.6
26
93
4
111
52
10
1
35
1.44
38718--38761
15
3.2
15
75
24
60
52
11
0
36
1.38
38718--38785
15
5.1
14
70
26
58
52
10
1
35
1.44
39792--39828
2
19.0
2
94
5
67
48
0
0
51
1.00
41682--42522
429
2.0
429
83
4
1070
41
13
14
31
1.83
43108--43181
29
2.5
30
93
4
132
28
2
13
55
1.52

Tables:   1

The End!