Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016148.1 Corchorus capsularis cultivar CVL-1 contig16169, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9829

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
250--460
55
3.8
55
95
0
368
49
7
18
25
1.73
404--623
72
3.1
71
84
5
284
48
6
18
27
1.72
450--555
37
2.9
36
80
13
137
49
5
16
29
1.68
541--607
32
2.1
31
83
10
82
47
5
19
26
1.72
932--1141
27
8.1
27
71
18
128
52
3
22
21
1.61
1012--1053
19
2.2
20
86
4
59
54
0
28
16
1.42
932--1134
100
2.0
100
81
9
236
53
3
22
20
1.61
1034--1141
26
4.1
26
77
9
110
53
4
20
21
1.63
6471--6516
18
2.5
19
82
3
58
52
8
8
30
1.62
6511--6561
14
3.6
14
84
10
52
45
11
9
33
1.74
6501--6562
28
2.2
28
82
5
72
51
9
9
29
1.66
8631--8722
33
2.6
34
81
6
105
42
16
7
33
1.76
8723--8855
37
3.6
37
80
4
169
22
18
15
43
1.87
8714--8860
74
2.0
74
93
0
249
23
18
14
44
1.86
8927--9030
35
3.0
34
83
4
118
30
16
18
34
1.93

Tables:   1

The End!