Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016154.1 Corchorus capsularis cultivar CVL-1 contig16175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14046

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
370--403
16
2.2
16
89
5
52
29
2
8
58
1.43
1041--1211
65
2.6
65
88
1
245
28
28
21
21
1.99
1243--1331
36
2.4
36
83
1
97
41
12
21
24
1.87
1272--1448
61
2.9
61
89
0
273
38
11
22
27
1.89
1390--1468
36
2.2
36
88
2
124
39
8
22
29
1.84
1390--1480
36
2.6
36
84
5
114
40
8
23
27
1.84
1591--1714
55
2.2
56
88
1
178
26
19
19
34
1.96
1965--2036
27
2.7
27
79
14
87
16
13
29
40
1.87
5882--5930
22
2.2
22
96
0
89
40
14
14
30
1.85
10044--10242
96
2.1
96
94
0
344
43
8
16
31
1.78
13424--13466
21
2.0
21
86
0
59
27
25
9
37
1.87

Tables:   1

The End!