Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016158.1 Corchorus capsularis cultivar CVL-1 contig16179, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7765
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:2560 original size:13 final size:13

Alignment explanation


    Indices: 2542--2569  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       2532 GCCGCTGACA

                         
       2542 GCACCCATGCCAT
          1 GCACCCATGCCAT

                         
       2555 GCACCCATGCCAT
          1 GCACCCATGCCAT

              
       2568 GC
          1 GC

       2570 CGATGTCACC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.21, C:0.46, G:0.18, T:0.14


Consensus pattern (13 bp):   
GCACCCATGCCAT
Done.