Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001616.1 Corchorus capsularis cultivar CVL-1 contig01616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1026
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35


Found at i:436 original size:21 final size:21

Alignment explanation


    Indices: 410--500  Score: 128
    Period size: 21  Copynumber: 4.3  Consensus size: 21

        400 TCACTTCGTT

                                 
        410 TCTTTTTGTCCAAGTTACTTC
          1 TCTTTTTGTCCAAGTTACTTC

                            *    
        431 TCTTTTTGTCCAAGTTGCTTC
          1 TCTTTTTGTCCAAGTTACTTC

                            *    
        452 TCTTTTTGTCCAAGTTGCTTC
          1 TCTTTTTGTCCAAGTTACTTC

                      *  * *      
        473 TCTTTTTGTCTAAATCACTTCC
          1 TCTTTTTGTCCAAGTTACTT-C

                  
        495 TCTTTT
          1 TCTTTT

        501 CTTTGTGAGT


Statistics
Matches: 64,  Mismatches: 5, Indels: 1
        0.91            0.07        0.01

Matches are distributed among these distances:
  21   57  0.89
  22    7  0.11

ACGTcount: A:0.12, C:0.24, G:0.10, T:0.54


Consensus pattern (21 bp):   
TCTTTTTGTCCAAGTTACTTC
Done.