genome.fa.s16160.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016160.1 Corchorus capsularis cultivar CVL-1 contig16181, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45442

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4564--4686	41	3.0	41	98	0	237	27	14	23	34	1.94
5938--6000	20	3.2	19	84	13	83	7	12	0	79	0.93
5945--6020	39	1.9	40	84	10	102	6	17	1	75	1.09
9736--9779	21	2.1	21	82	0	52	29	18	22	29	1.97
11785--11841	28	2.0	28	93	0	96	40	7	17	35	1.77
14274--14314	14	2.9	14	79	20	50	56	4	0	39	1.21
15080--15145	31	2.1	31	88	5	98	27	19	4	48	1.68
15563--15611	24	2.0	24	96	0	89	18	10	36	34	1.85
16929--16966	19	2.0	20	85	15	53	28	5	2	63	1.30
17132--17194	22	2.9	22	79	6	65	34	9	17	38	1.82
17183--17239	22	2.6	22	82	0	69	29	14	17	38	1.89
17312--17374	22	2.9	22	79	6	65	34	9	17	38	1.82
17079--17446	180	2.1	179	98	0	718	29	8	19	41	1.82
17363--17419	22	2.6	22	82	0	69	29	14	17	38	1.89
17572--17868	22	13.3	21	70	17	138	39	10	15	34	1.81
17582--18176	44	13.4	44	67	17	198	40	9	15	34	1.80
17720--17868	66	2.3	66	83	2	174	40	10	13	34	1.79
17974--18024	19	2.6	20	90	6	86	45	11	17	25	1.83
17974--18571	22	27.6	22	70	11	224	39	10	15	34	1.82
18180--18286	45	2.4	44	80	10	126	40	9	14	36	1.78
26042--26189	32	4.6	32	93	0	251	12	28	43	16	1.83
29592--29618	13	2.1	13	100	0	54	44	14	0	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30762--30810	25	2.0	25	84	4	64	36	0	28	34	1.58
31104--31176	30	2.4	31	83	2	94	28	16	16	38	1.90
32099--32141	21	2.0	21	86	0	59	13	9	23	53	1.69
33290--33328	18	2.1	19	85	4	53	30	23	28	17	1.97
35495--35570	30	2.5	31	86	4	91	15	23	26	34	1.95
35500--35570	32	2.3	32	90	4	110	15	22	26	35	1.94
37182--37335	73	2.1	70	77	13	168	50	0	10	38	1.42
37199--37338	73	2.0	72	84	6	189	50	0	11	37	1.44
37318--37393	39	1.9	39	84	10	102	52	2	10	34	1.50
37243--37464	109	2.0	111	94	2	394	52	1	9	36	1.43
39192--39224	6	5.5	6	100	0	66	18	0	45	36	1.49
44729--44771	21	2.2	18	84	12	50	37	0	9	53	1.33

Tables:   1

The End!