Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016161.1 Corchorus capsularis cultivar CVL-1 contig16182, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1057
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39


Found at i:850 original size:6 final size:6

Alignment explanation


    Indices: 839--868  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        829 ATTCTGCTTC

                                              
        839 AGATTT AGATTT AGATTT AGATTT AGATTT
          1 AGATTT AGATTT AGATTT AGATTT AGATTT

        869 GCTTTGCTTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50


Consensus pattern (6 bp):   
AGATTT

Done.