Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016162.1 Corchorus capsularis cultivar CVL-1 contig16183, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12172
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:4314 original size:22 final size:21

Alignment explanation


    Indices: 4261--4316  Score: 85
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       4251 TGACCGGCCA

                  *              
       4261 CATGCCTGGCCATCACCATCG
          1 CATGCCCGGCCATCACCATCG

                                *
       4282 CATGCCCGGCCATCACCATCT
          1 CATGCCCGGCCATCACCATCG

                          
       4303 CATGACCCGGCCAT
          1 CATG-CCCGGCCAT

       4317 GCCTAAGCAC


Statistics
Matches: 32,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  21   23  0.72
  22    9  0.28

ACGTcount: A:0.20, C:0.45, G:0.18, T:0.18


Consensus pattern (21 bp):   
CATGCCCGGCCATCACCATCG
Done.