Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016164.1 Corchorus capsularis cultivar CVL-1 contig16185, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22020

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
951--986
18
2.1
17
94
5
63
63
8
16
11
1.49
1449--1473
10
2.5
10
100
0
50
28
8
24
40
1.83
1582--1617
19
1.9
18
88
5
54
33
22
2
41
1.68
1855--3127
604
2.1
603
94
0
2246
27
13
19
39
1.89
8095--8123
6
5.0
6
95
4
51
51
13
0
34
1.42
14338--14371
12
2.7
13
90
4
52
20
11
8
58
1.59
17150--17260
16
6.9
16
78
11
111
34
36
19
9
1.85
17143--17227
32
2.7
32
92
0
134
30
38
21
9
1.85
17143--17260
48
2.5
48
80
8
132
33
36
20
10
1.86
17369--17415
21
2.2
21
92
0
76
29
8
6
55
1.55
17886--18019
16
8.0
16
73
15
101
35
38
17
8
1.80
17877--17962
32
2.8
32
78
3
95
33
38
18
9
1.83
17925--17988
23
2.7
23
82
4
74
34
40
20
4
1.73
19750--19801
26
2.0
25
81
3
59
30
5
5
57
1.46
21337--21455
33
3.5
33
82
8
134
23
42
26
7
1.81

Tables:   1

The End!