Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016167.1 Corchorus capsularis cultivar CVL-1 contig16188, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2777
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31


Found at i:1885 original size:30 final size:30

Alignment explanation


    Indices: 1851--1913  Score: 92
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       1841 CATCTTCAAG

                                  *        
       1851 TCCATGATAAGTCCTTGGCG-CTTCATTCCC
          1 TCCATGATAAG-CCTTGGCGTCATCATTCCC

                             *            
       1881 TCCATGATAAGCCTTGGGGTCATCATTCCC
          1 TCCATGATAAGCCTTGGCGTCATCATTCCC

               
       1911 TCC
          1 TCC

       1914 CCCTTGAAGA


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  29    7  0.23
  30   23  0.77

ACGTcount: A:0.17, C:0.33, G:0.17, T:0.32


Consensus pattern (30 bp):   
TCCATGATAAGCCTTGGCGTCATCATTCCC
Done.