genome.fa.s16170.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016170.1 Corchorus capsularis cultivar CVL-1 contig16191, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129620

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5171--5309	47	3.0	47	88	2	208	39	10	12	36	1.79
5308--5454	43	3.5	42	80	9	131	35	16	16	31	1.91
11550--11611	30	2.1	30	93	0	106	27	3	30	38	1.72
13418--13479	30	2.1	30	96	0	115	27	3	29	40	1.72
31012--31036	13	1.9	13	100	0	50	52	0	8	40	1.31
31174--31290	46	2.5	46	91	2	182	53	17	6	22	1.66
31220--31298	23	3.4	23	66	10	63	55	17	5	21	1.61
31202--31274	22	3.2	22	66	7	56	47	20	5	26	1.71
33277--33314	11	3.3	12	92	7	62	50	13	0	36	1.42
36642--37237	294	2.0	293	92	1	996	22	17	20	39	1.92
47437--47499	33	1.9	33	96	0	117	39	6	22	31	1.79
47779--47825	16	2.9	16	96	0	85	48	8	0	42	1.33
47809--47856	25	1.9	25	87	8	71	47	8	2	41	1.45
48738--48790	27	2.0	27	100	0	106	47	15	3	33	1.63
50883--50919	18	2.1	18	89	0	56	21	21	21	35	1.96
52232--52276	12	3.8	12	81	0	54	60	24	8	6	1.51
56173--56202	2	14.5	2	93	6	51	50	0	3	46	1.18
59423--59518	35	2.7	35	91	0	147	18	7	31	42	1.78
66273--66723	228	2.0	228	93	0	776	31	15	17	34	1.92
67053--67111	29	2.0	30	86	3	84	40	16	5	37	1.71
74352--74413	31	2.0	31	87	0	88	22	24	27	25	2.00
79130--79154	13	1.9	13	100	0	50	96	0	4	0	0.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79129--79155	14	1.9	14	100	0	54	96	0	3	0	0.23
80712--80740	2	15.0	2	92	7	51	48	0	0	51	1.00
80712--80752	21	2.0	21	85	9	57	48	0	2	48	1.14
85425--85528	31	3.4	31	88	5	142	48	10	11	29	1.73
85660--85733	31	2.4	31	90	4	114	39	12	14	33	1.84
90029--90088	25	2.5	25	89	5	88	35	18	0	46	1.49
90097--90164	26	2.6	26	90	0	109	54	10	1	33	1.43
90097--90200	52	2.0	51	81	9	122	53	9	1	34	1.45
91053--91079	2	13.5	2	100	0	54	48	0	0	51	1.00
92866--92915	27	2.0	24	84	11	64	44	0	0	56	0.99
92870--92922	20	2.5	21	81	6	54	39	0	0	60	0.97
93921--94544	312	2.0	313	97	0	1187	30	13	18	37	1.89
97033--97099	12	5.4	12	72	18	57	55	5	0	38	1.25
97531--97566	14	2.5	14	90	4	54	52	8	0	38	1.32
97457--97668	111	1.9	112	92	2	356	52	8	2	36	1.45
112194--112223	2	15.5	2	93	6	53	46	0	0	53	1.00
112886--113835	41	23.8	40	74	13	524	26	17	20	35	1.95
112854--113468	203	3.1	201	91	2	970	27	17	20	34	1.95
112843--113753	359	2.5	360	88	4	1343	26	17	20	35	1.95
113302--113753	161	2.8	161	94	1	791	25	17	20	36	1.94
116607--116672	27	2.4	27	82	9	82	33	24	13	28	1.93
117297--117366	30	2.3	31	80	2	79	35	24	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119953--120031	40	2.0	40	87	5	115	41	13	13	30	1.84

Tables:   1

The End!