genome.fa.s16172.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016172.1 Corchorus capsularis cultivar CVL-1 contig16193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68111

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1740--1790	18	2.8	18	84	0	66	29	0	13	56	1.38
1926--1970	18	2.7	16	77	12	54	33	8	42	15	1.78
9508--9532	2	12.5	2	100	0	50	52	0	0	48	1.00
9530--9565	3	12.0	3	100	0	72	66	0	0	33	0.92
11413--11447	2	17.5	2	100	0	70	51	0	0	48	1.00
15636--15666	15	2.0	15	93	6	53	0	9	0	90	0.46
15640--15666	12	2.2	12	100	0	54	0	7	0	92	0.38
15988--16052	29	2.2	30	78	8	71	47	15	13	23	1.81
17032--17110	21	3.7	21	74	15	81	21	7	29	41	1.80
17133--17175	22	2.0	22	85	0	59	23	20	18	37	1.94
17296--17355	29	2.1	28	81	3	66	53	6	10	30	1.60
18530--18590	29	2.1	29	81	6	70	22	6	3	67	1.29
19000--19048	21	2.3	21	82	3	53	20	12	24	42	1.86
18962--19210	87	2.8	86	87	4	336	24	18	19	38	1.93
19122--19266	66	2.2	66	85	1	184	24	12	22	40	1.89
19041--19331	152	1.9	153	88	0	440	24	14	20	40	1.90
19188--19404	80	2.6	83	83	4	251	24	11	21	42	1.85
19407--19474	21	3.2	21	87	2	82	27	8	22	41	1.83
20295--20327	10	3.7	9	88	11	50	42	0	0	57	0.98
21244--21277	9	3.8	9	84	0	50	50	2	0	47	1.16
22772--22813	16	2.6	15	88	11	57	64	14	0	21	1.29
23673--23712	19	2.1	19	85	4	53	42	22	0	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34917--34988	33	2.2	33	87	5	101	26	55	15	2	1.54
43880--43927	25	1.9	25	91	0	78	22	14	22	39	1.91
44037--44063	1	27.0	1	100	0	54	100	0	0	0	0.00
44938--44990	20	2.8	20	82	5	65	18	11	5	64	1.46
55817--56045	114	2.0	114	95	0	413	13	20	30	35	1.91
56106--56147	17	2.5	17	84	7	50	21	16	23	38	1.93
56061--56279	112	2.0	111	91	0	357	27	21	21	29	1.99
56356--56384	13	2.2	13	100	0	58	44	0	0	55	0.99
67597--67621	1	25.0	1	100	0	50	100	0	0	0	0.00

Tables:   1

The End!