Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016174.1 Corchorus capsularis cultivar CVL-1 contig16195, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25334

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2148--2774
335
1.9
334
94
1
1114
24
16
16
43
1.87
5474--5521
21
2.3
20
86
6
69
6
47
8
37
1.59
5932--6030
32
3.1
32
89
2
155
14
35
36
14
1.86
6101--6133
14
2.4
14
94
0
57
24
24
3
48
1.65
6275--6303
15
1.9
15
100
0
58
34
0
20
44
1.52
7372--7437
30
2.2
29
81
10
71
50
4
0
45
1.22
8417--8448
2
16.0
2
93
0
55
50
3
0
46
1.17
8763--8832
31
2.3
31
87
5
97
37
12
17
32
1.87
10701--10760
29
2.0
30
83
3
77
20
26
11
41
1.86
10955--11058
29
3.6
29
89
2
154
40
14
24
21
1.90
10941--11058
59
2.0
59
89
0
182
38
14
26
20
1.91
11764--11788
11
2.3
11
100
0
50
56
28
0
16
1.41
19397--19651
132
1.9
136
88
4
394
46
2
11
38
1.55
20747--20780
17
2.0
17
100
0
68
35
17
29
17
1.93
23555--23614
25
2.4
26
83
10
72
58
0
5
36
1.20
25002--25066
29
2.2
31
81
13
82
50
13
7
27
1.69
25011--25066
29
2.0
29
89
3
87
46
16
8
28
1.77

Tables:   1

The End!