genome.fa.s16175.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016175.1 Corchorus capsularis cultivar CVL-1 contig16196, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91987

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4583--4610	2	14.0	2	100	0	56	50	0	0	50	1.00
5810--5844	11	3.2	11	91	0	61	5	0	11	82	0.82
7296--7340	22	2.0	21	83	8	54	62	0	8	28	1.25
16237--16299	32	2.0	32	87	6	92	30	11	17	41	1.84
23227--23261	2	18.0	2	94	5	63	51	0	0	48	1.00
28653--28682	14	2.1	14	100	0	60	6	36	6	50	1.55
33737--33764	3	9.3	3	100	0	56	32	0	0	67	0.91
47440--47465	3	8.7	3	100	0	52	30	0	0	69	0.89
50063--50101	20	2.0	20	85	5	53	28	23	5	43	1.75
54423--54503	27	3.3	27	63	33	72	43	14	13	28	1.84
54418--54513	47	2.0	47	100	0	192	45	14	14	25	1.83
55862--55894	3	11.3	3	87	6	50	33	33	0	33	1.58
64504--64623	26	4.4	28	87	6	176	18	14	25	42	1.87
64504--64623	54	2.2	54	100	0	240	18	14	25	42	1.87
66237--66275	19	2.1	19	85	9	53	12	35	10	41	1.77
66237--66283	21	2.3	20	82	7	51	17	34	8	40	1.79
70852--70920	27	2.5	28	79	6	79	40	10	14	34	1.80
70862--70919	14	4.3	13	78	8	62	39	8	13	37	1.76
73206--73385	35	5.1	35	87	0	252	16	20	22	40	1.91
73354--73612	70	3.7	70	88	3	378	20	20	22	36	1.95
73894--74698	63	13.0	63	85	4	947	24	20	14	40	1.90
73894--74702	185	4.3	186	88	2	1180	24	20	14	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73903--74698	248	3.2	247	83	4	996	24	20	15	40	1.90
73903--74702	370	2.1	374	91	1	1315	24	20	15	40	1.90
74792--74820	14	2.1	14	100	0	58	41	6	20	31	1.79
82306--82388	31	2.7	31	83	14	125	31	18	18	32	1.94
84531--84702	36	4.8	36	80	2	175	30	22	23	22	1.99
84549--84702	72	2.1	71	86	0	200	31	22	23	22	1.98
84940--85028	32	2.8	31	91	3	133	32	17	24	24	1.97
85029--85271	44	5.5	44	81	3	267	31	17	22	29	1.96
85621--85789	37	4.6	37	81	2	191	20	18	24	35	1.95
85603--85789	73	2.6	73	82	4	207	20	19	24	35	1.95
85881--86106	75	3.0	74	89	1	344	31	17	24	26	1.97
87565--87626	29	2.1	29	82	11	74	41	9	9	38	1.71

Tables:   1

The End!