Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016177.1 Corchorus capsularis cultivar CVL-1 contig16198, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15146

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
712--2539
667
2.7
662
88
2
2598
35
16
14
33
1.89
707--2539
332
5.5
330
81
6
2034
35
16
14
33
1.89
2594--2660
27
2.4
28
82
9
84
50
0
5
43
1.26
2585--2760
94
1.9
95
86
3
257
54
3
6
35
1.44
2987--3082
38
2.6
37
80
3
120
53
11
20
14
1.72
3179--3274
31
3.1
31
87
1
140
47
5
16
30
1.68
4254--4291
20
1.9
20
88
0
58
21
42
10
26
1.85
4592--4751
33
4.8
32
83
12
182
18
34
31
15
1.92
4569--4751
66
2.8
64
79
14
228
18
34
32
14
1.90
6488--6517
13
2.3
13
94
0
51
36
3
0
60
1.14
10094--10152
31
1.9
31
89
0
91
28
20
6
44
1.77

Tables:   1

The End!