genome.fa.s16180.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016180.1 Corchorus capsularis cultivar CVL-1 contig16201, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76476

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11--43	2	16.5	2	100	0	66	51	0	0	48	1.00
4662--4707	24	1.9	24	90	0	74	23	39	13	23	1.90
5517--5720	112	1.8	113	83	3	277	42	12	12	32	1.80
19387--19418	1	32.0	1	100	0	64	0	0	0	100	0.00
27162--27188	7	3.9	7	100	0	54	29	11	29	29	1.91
32002--32083	40	2.0	40	88	0	119	29	12	46	12	1.77
33050--33084	15	2.3	15	95	0	61	45	31	5	17	1.71
33438--33481	22	2.0	22	91	8	72	27	15	11	45	1.81
36054--36088	10	3.6	10	88	3	54	85	0	0	14	0.59
41894--41951	24	2.5	24	81	15	68	13	15	15	55	1.70
42462--43033	48	12.0	48	81	3	607	9	24	23	42	1.83
43014--43136	48	2.6	47	82	8	151	21	24	20	34	1.97
43687--43747	3	20.7	3	86	3	88	63	0	1	34	1.04
52211--53215	438	2.3	437	82	5	1193	31	13	13	41	1.83
54471--54567	31	3.2	31	83	2	124	24	15	24	35	1.94
59580--59661	42	2.0	42	82	4	103	36	19	15	28	1.93
61518--61547	1	30.0	1	100	0	60	0	0	0	100	0.00
65987--66046	27	2.3	27	85	2	77	61	6	1	30	1.31
67572--67607	18	1.9	19	88	5	56	2	27	0	69	1.02
67567--67610	18	2.4	18	78	14	54	2	27	0	70	0.99
69805--69874	26	2.6	26	90	4	104	41	5	40	12	1.67
69980--70058	37	2.1	37	88	6	124	13	11	13	60	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70090--70164	24	3.2	24	74	14	93	24	10	10	54	1.66
69907--70138	127	1.8	128	99	0	457	15	18	9	56	1.66
70104--70175	22	3.2	22	74	14	83	19	6	13	59	1.57
71248--71304	28	2.0	28	93	0	96	52	1	17	28	1.54
71323--71371	6	8.2	6	90	4	64	2	18	0	79	0.83
71404--71485	26	3.2	26	65	25	75	43	15	15	24	1.86
71405--71503	50	2.0	50	97	0	189	44	17	14	24	1.85
75888--75939	17	2.9	17	75	16	52	7	21	0	71	1.11
75889--75935	24	2.0	24	83	8	60	6	21	0	72	1.07

Tables:   1

The End!