Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016183.1 Corchorus capsularis cultivar CVL-1 contig16204, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24497

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2891--2937
24
2.0
23
84
12
60
72
6
2
19
1.17
3348--3710
187
1.9
189
92
3
615
44
10
5
39
1.62
4642--4676
17
2.1
17
94
0
61
48
25
11
14
1.77
5336--5374
14
2.7
14
88
4
60
2
12
25
58
1.47
5440--5471
11
2.8
11
95
4
55
0
9
34
56
1.32
5441--5476
12
3.1
12
92
4
56
0
11
33
55
1.35
11640--11728
42
2.1
42
95
0
160
38
17
10
33
1.84
11776--12021
78
3.2
78
93
2
415
35
14
0
49
1.49
19238--19292
16
3.5
15
78
9
56
9
9
32
49
1.66
20261--20336
24
3.3
24
68
20
81
44
10
1
43
1.47
20249--20339
44
2.1
44
100
0
182
43
8
2
45
1.47
24269--24300
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!