Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016184.1 Corchorus capsularis cultivar CVL-1 contig16205, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22297

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
161--224
2
31.5
2
83
12
69
45
1
6
46
1.37
436--480
20
2.2
20
96
0
81
40
22
13
24
1.90
1737--1799
30
2.1
30
91
5
101
22
41
28
7
1.82
3156--3198
22
2.0
22
100
0
86
20
9
32
37
1.85
5304--5406
33
3.1
33
80
5
118
26
9
19
44
1.81
5422--5509
30
2.8
31
82
6
106
29
9
21
39
1.84
7462--7508
23
2.0
23
91
0
76
23
34
27
14
1.94
8376--8529
2
77.0
2
100
0
308
50
0
50
0
1.00
10927--10957
2
15.5
2
100
0
62
51
48
0
0
1.00
14364--14408
22
2.0
23
86
4
65
17
6
26
48
1.72
14715--14741
1
27.0
1
100
0
54
0
0
0
100
0.00
16373--16872
167
3.0
164
83
4
637
38
16
15
30
1.90
17152--17534
132
2.9
132
90
1
572
38
13
16
31
1.88

Tables:   1

The End!